GenomeView

GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded.
This project has moved to GitHub: https://github.com/GenomeView/genomeview

Features

Genome browser
Short read alignment visualization
Multiple alignment viewer
Comparative genomics
NGS (Next Generation Sequencing) viewer
Annotation editor
Easy integration with existing websites and data platforms
Authentication and encryption

Project Samples

Detailed multiple alignment and some gene annotation

Short read alignments to C. elegans chr I from 3 experiments

C. elegans nucleotide scale short read alignment

Synteny with 14 organisms for a complete bacterial genome

Project Activity

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License

GNU General Public License version 2.0 (GPLv2)

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GenomeView Web Site

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Additional Project Details

Languages

English

Intended Audience

End Users/Desktop, Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2007-10-17

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